Available Packages and Analyses
To see available packages and analyses, please go to the Phylogenetics task view on CRAN (also shown below). It describes available packages in R, whether or not they are themselves in CRAN. You can install the subset of relevant packages that are in CRAN (especially useful after an upgrade to R has wiped out your packages or you move to a new computer) by doing
install.packages("ctv") library("ctv") install.views("Phylogenetics")
Remember that packages that aren't on CRAN, some of which are quite useful, will not be installed with this procedure. The task view links to these so you can install them yourself.
If you have things you want to add/change to the CRAN task view, please contact its maintainer, currently Brian O'Meara.